NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1022160

Scaffold Ga0247723_1022160


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1022160 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2120
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F043935Metagenome155Y
F060914Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10221601F043935AGAAGMTKKEIEILDDQIQYLCKNYQDRIKIMRQTLGINTNFNFLREVETIESLYKSLLELRKKEKATYFSCGTSGWHIIYLRNKKTYKDGEKFVIKIYFSFVEADNYE
Ga0247723_10221603F060914GAGGMKRLIKVRSDISSSIFPIELYQVDDYFTAEENGVELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKAQGIL
Ga0247723_10221604F002406GAGMENLKWIRAMSDRLRDELSSEYDDETKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFEDANEEIN
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