NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1042044

Scaffold Ga0247723_1042044


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1042044 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1354
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028157Metagenome192Y
F041769Metagenome159Y
F085645Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10420441F028157AGGAGVNIADPKFATVLADQDGHSRWIGHIDATDIMNAYRTGGIHLLVTLNPEGDITVAFKPGRHWQTTWSPPITLE
Ga0247723_10420442F085645AGGAGVNHDYTKPDSNGADILTEAHNLITGPRQQAYSHPFDDYWKVTQLFHNMTGIQLSIKQAITFMICVKLARIATNDQHGRWHRDSVVDAAGYLGCLSMVHEHIQQKREDAVTRFKENS
Ga0247723_10420443F041769AGGAGMSYDLDALRQMNEEAQIRISELSTALATITEQRDNLQDSLDAAINEMDSHKTHIHHLTTTIERLRLHIQQGVEL
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