NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1043941

Scaffold Ga0247723_1043941


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1043941 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1312
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y
F028166Metagenome / Metatranscriptome192Y
F078716Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10439411F028166AGGAGMTNGNDLTGFNETKAGDTNNLDLNPTGQDAASAFPATDKSTQDGAGLGQNGK
Ga0247723_10439413F001280GAGGMCIECGCEALGSETGIIPVTVTDVSRDGDSGLTLNMTSTPEQTRQFINE
Ga0247723_10439414F078716N/AMSENGTGTPTAPISEPSGALTSREVPRKHPRQGSRPGIKIDQNKHGIRRETSLDPKPQKKGRPKKV
Ga0247723_10439415F006846AGGAMLIEFVERYLMRPKRLREAIESVVHENDELLRILKQYEEDDTPTNLTWAEGDTWYGWTYNSNVKRYYFDDIGNKSLMGLW
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