NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1078525

Scaffold Ga0247723_1078525


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1078525 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)873
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001460Metagenome / Metatranscriptome690Y
F025737Metagenome / Metatranscriptome200Y
F061860Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10785251F025737GGAGMKPGDKDKLNECLSILDTTDLGLSLVWLWTWSTIKNFMADETFIMKKTEDEMWDCLCE
Ga0247723_10785252F061860AGAAGGMNTTQLEPRLQKLVDLGESGTDILHGELKNMMYECEQVLVPLLQNSNELGSDEDYSDTVDRLYNEGYMDALTAVYGLTYQLAFAIGARNEARG
Ga0247723_10785254F001460GAGGMLGYTEEDLNRMINAVHDVKLFYLRSPSDLMNKDPLVKDLEDTVSFMQGLWAEGYFDHV
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