NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10000027

Scaffold Ga0247722_10000027


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10000027 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)118776
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (64.60%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016250Metagenome / Metatranscriptome248Y
F043258Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0247722_1000002737F043258GGAMCISMNAADERSLESIRQKVFPFLRVDWRTDTETAPRFLILDECETLTEAAQLSLQTILNTHPQQICVILICNSQSRIHPKLRQRLLKIRYDPPQSQEKSTMASSIMRGDLRQHGRAVHMEYRLWKYLHCHPSEQSSLIYDEHVDDHTIVTELLLLSDMFQLQDSPWITRINTVYSLLVDDTTPQQEVHEQLIQLIREYKQKFESKWK
Ga0247722_1000002748F016250AGGAGVLLIISCVLAVVYSSDQIRKNPFLDRHLLQKGMDRPVIWIYYDNSEVNARQWSDFGARSDRAVNIPFLNLCYQSIVHHHSDLYRIEVIGGLSGAADWLGGWDQLPPGLRDPLSPVNEAERNYLRAAILARYGGLWLSASTVCLKSFGVLPKDKTVFFGTDLDEMYAGPEGTVIPGFRAIWCPVPQHPMFVEWAAVTYARVAAARGGAQIRGDEKWDFTRFTTQYVHTGIMVDPSAEGMRKKDGKRLQLEDLLASGAMSPACPVAVFVSFPWKELLDRRMFGWFLRMSEEDIMSSDLAVSHMLQESLAQPLAQPMAPLALPPLLVHPLA
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