NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10000081

Scaffold Ga0247722_10000081


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10000081 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58020
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (35.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029103Metagenome189Y
F037070Metagenome168Y
F048777Metagenome147Y
F073550Metagenome120Y
F082681Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0247722_1000008129F082681GAGGMIEWIVILLIIFCIIVWHYSQSSSQYSISQIKESQISTSLQTLWEEKKPIVVSEVKTTGIWTSDGLKQTRFWNAQPIWQQYQDAPMTQRQVPSSLQLTWSEILGISQIESDILLRWFDMSPWVFSTRTEAHIGPDGLRHMYGWATAITCTEGEARCILLHNAQKAKLPPGWKGLRWSEATVAHHPLWTQVQNIEVILRPSTVLLVPPHWIVAIEPLDPAKPIWWTRSDLHHPISRWAQGWNEG
Ga0247722_1000008130F037070AGGMSSATAPMNPIGTPYEKGSPTESYPIQSSSTQPFFPPVCLKSHWDPTKIYSRTVPQTLVPLPLDFRPYTKVCLEYRTSAAGQNAPVISDDMVFPQGGKSYPPDRYLRAVDKESLLRRMDRPLGTCDTEQYLPSENGTMYVDGMLVPRSAKPPSRFVEEISMPQALLRAGTYNCRTQADEKNWSRSTRLFNNATKQDRYKGPTEPPRQNIWSDSRRCESSLSNPTQKQLEPNGCRAWGC
Ga0247722_1000008144F048777GGAMIIVSGYLEKSGSKIQGFEASKESNVVLDTSKNTMFPYTTDPIKSLDQYELEAVFENEGDRELKKQQINQLTRQYPLDWVNYPPNSSKFQSGQAKYIEGFSSESSATDLNTPYKDIGDGNLTPPDTAAIEREEKEILATYQPRKTGDMKSYDVYDANKLLEQIYQPKGLKPIVNKRDENVFEVVSTRSIKDKIEYEDDLPDAPATSDNRPGPGEAKIEVPPAALEVAAGRDPFYEPTTSTRSSRTDYMRWTPGLERMFAPTYPITDWVGQAAE
Ga0247722_1000008149F073550GGAGMASKNSASIEMAGVPQLPANSLFDVRLKKDQARQRAYNQILEQALQKVAHSAIAPNQPTFVYFNVPAFVLGLPGLDLKDCIIYLVYQLRSQGYEVRYTYPNLLWISWAHHERQYLMEKNPIVQSMMPPKMAGPEKRRGASQVSLQQAATSSPNAGSSLRAADYTPPAGFVETMERPSPYAKPKQSVRFSDSKDSLGNVLDELWKI
Ga0247722_100000816F029103N/AMRAAVEGFTNPSGAESHRQDPVYAEAIAAILAFTISVLIVSLIGLWLWNFSVVPLFEFARPAKSVFQILGLMLFLSLVHP
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