 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028027 Open in IMG/M |
| Scaffold ID | Ga0247722_10000131 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 45548 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (6.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: West Virginia | |||||||
| Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002779 | Metagenome / Metatranscriptome | 530 | Y |
| F026883 | Metagenome / Metatranscriptome | 196 | Y |
| F087244 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247722_1000013112 | F026883 | N/A | MLQKHFHTQEAAMDEWAFWLFEENIKIVNDIVEEENNQRKKDEEGQQKGMPDTSSMMKNASNMSNISMPKF |
| Ga0247722_1000013137 | F002779 | N/A | MKNLKLELFNFKKNLDLGQEEISVIVEGHMNACNEASEKAIVQSLNERLKPYTYDKDVKSLLESLNNDMVSHELLYELKNLYNVLNTKNSGELYRQPINVLLQTINLETDQDRMSKVLNELAVYDWVPEIKLFVHNLTKSPEQRTNLLSGGKGESIFTIVESVEDGHIALVRDSWFLLSENVIEKTLVENHVKDEESLKSLRMLETAMKYASVTEDRVNFRISEYLTIGLSVAKKGKVFINDDEMNDETTLESLFNSPIVPIVNKNFYPILLEVSKNLDKFVELDVVKRVNNLINPYLECFAFNYKKATFLYRCDERYGNSFFKYESALELVNEVRNELNYDLTYFFENKLGKELVVKRKLEDKEREITLKLEDVNFNIEKLKGSMKMIGESEVLTTALKNLEKRKTVLDAELYGVKETQYNERVRS |
| Ga0247722_100001319 | F087244 | N/A | MPLPHYTQISNVGSPGGPGTLPDEVVYTNLFEVTFVLPVILQAQKRDALLLLENATKISLQQLTEFDTTAKEQRFKYSTRVFQTTPNKTSGTLQIPFQVNVNNNGSMEVWNTLKAWYDLLYNSQNGSLHYKSDMIGTIIVNQHDKKGVVLRRVTFQNCQMSKLAGYELDWAQNNIIDSVIADFVYDYFIDEYIDSGFSINPPLISGY |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |