Scaffold Ga0247722

Basic Information
Taxon OID	3300028027 Open in IMG/M
Scaffold ID	Ga0247722_10000262 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34422
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (77.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

34422

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (77.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003265	Metagenome / Metatranscriptome	496	Y
F006660	Metagenome	367	Y
F043944	Metagenome	155	Y
F050321	Metagenome / Metatranscriptome	145	Y
F054875	Metagenome	139	Y
F073561	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247722_1000026227	F050321	AGG	VITFDKWYGLVRPTHTAAQLAFDKAVEKVQEEYHYAIAANKLEWKTLEMELELYDKRARQNTIELGSFENRRRFQIFV
Ga0247722_1000026228	F003265	AGAAG	MTKWFALLLISLVFWATAQTKCLISDFYGLSNLHNPSERHQRLSEWLTTNGDSCSTEQLVSIWNNLAMWAGVADSAEIRQKILFYYARAMEREKK
Ga0247722_1000026233	F073561	AGGA	MALFSQNTITQVSGFDNPLITGELVYNQSTYWNLVFNSNGSPVNLTGATINAQIVRRTVSNLQDTRNGLSFSIGNYEPTPTPVNLTISNRIDANGSFTLVIDDSVWSLISSDPELDINAVNPACFSGRIKISFPAGGGNPADDGIIFLMFLVRSDGIVVV
Ga0247722_1000026238	F006660	GGAGG	MSFQTIFDIQQSLTVNNRRTVGQQVSRSGQVRVAQYLTSVPWVFTVQPHNYLYYPQVRNVIQAIDNKDRQLPETISFASTTLSWFTAYQGSLSTVQANALTLAAVPAANATTITVGNLPSVSSSDFVFKAGDFLQLGLYPYKVTENVLRGSASTVSVTLHRPVIGTPSTGTLTAVGSACTFYVLAESCPTYTLNPMTNGAFVQWDSPFVFREDIIG
Ga0247722_1000026240	F043944	N/A	MIFNGHTLETISELDDVTMANIQTMYADGLIGNYGLLTQIATLTNGVFNYMRAANSPAYKLANILGSAYDYIYPPLPPEIQKEAVSNSLLAFMTQAQGFDKSKFEVKHG
Ga0247722_1000026241	F054875	AGG	MTKFSSAFGEKYQTNKKNLLIRSFELGGHIFKVRIPLLAESDAIYAKVTNPDDETIARIYEQLTKPLMQFESSQTEEFRFVEGDILVDGRSMREAAKNKAITEARITEFFKLLVPELEGASLEDLTYKDIEDEFPMSVQMQIVEKIGEAISPTYKESRGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247722_10000262

Overview

Ecosystem & Geography

Associated Families

Sequences