NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10000453

Scaffold Ga0247722_10000453


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10000453 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25351
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (47.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037070Metagenome168Y
F082681Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0247722_100004532F037070AGGMTSAIAPMSPMGTPFKNGSPTESYPIQGSTTQPFFPAVCLSSHWDPTQIYKRSVPVEQVSLPVDFRPYTKVCLEYRTSAVGQNAPYVSDSTVFPQGGVKYPPDRYIRAVDKESLLRRLDRPLGTCDDKEYTPPQNGDMYVDRMLVPASKKPPSQFVEEISMPKALLRAGTYHCRAEADERNWSRSTRLFNNATKQDRYLGVTEPPRQNIWKDPRRCENPGPTEKKLEPEGCRAWGC
Ga0247722_100004533F082681N/AMIEWIIILLIIFCIIVWHYSQSVSKYSLSQIKESQIPSNLLTLWEEKVPVVVSDVRPKDIWVASNLSQTRFWPTQPVWADYQENPSKQVDVPQSLELTWSEILGISQIESDTLLRWFDLNPLIFRCKTEAHIGPEGLRYMYGWATAISCTDGEARCILVHNTQKSKLPPGWKGLRWSEATVKHHPLWSQVKHIEVILRPSTVLLVPPHWVIAIEPLNDKPIWWTRTDLHHPISQWAQSWNEK
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