NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10006808

Scaffold Ga0247722_10006808


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10006808 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5203
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000714Metagenome / Metatranscriptome924Y
F001125Metagenome / Metatranscriptome769Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0247722_1000680811F063705N/AMTKSSMFLEYMKLHLISLNQDWEDSKNGAPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNSTNERV
Ga0247722_100068083F000714GAGGMEESTVTTKPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSLEWDLHNGRQSQKRVTLLLSQIDAVKDIITEAYADSSDQETLQAIAEALDIQLTREVEWSATIEVSGTLTIDLLESTVDDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN
Ga0247722_100068087F001125GGCGGMGDRANFGFRDSKENIVFLYGHWAGYRMLENLADAVSAAEPRWNDEGYATRIAISHLIKDEWASETGWGIYVNQLGDNEHKVPIIDWKNKTFTLMEEDLETVVFTTSLNAFVSKYSSQPSMV
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