Scaffold Ga0265355_1001520

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265355_1001520

Scaffold Ga0265355_1001520

Overview

Basic Information
Taxon OID	3300028036 Open in IMG/M
Scaffold ID	Ga0265355_1001520 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1519
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9982	Long. (^o)	10.7894	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F013924	Metagenome / Metatranscriptome	267	Y
F070360	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265355_10015201	F013924	GGAGG	MNEHLLDPKFIMLAGVVILVIAVVAWMYVRKRRST
Ga0265355_10015202	F070360	AGG	MLVLTLKEALMKSRPFPEIPCLICGKPIDLSVDLSADENGKAVHTECYVKRITTPQAVPSIAMMAD
Ga0265355_10015203	F000065	GAG	MTHGTNKPTRKLRKASQPPLPHAGAIPDSDRAKRPPLSEASATGPELSPGDRVEGLGNFGKPNGEFGTVERTNEDDAVVKWDDDGRVRLHQPSLRKV

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