NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265355_1010732

Scaffold Ga0265355_1010732


Overview

Basic Information
Taxon OID3300028036 Open in IMG/M
Scaffold IDGa0265355_1010732 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9982Long. (o)10.7894Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011955Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0265355_10107321F011955N/AQWPLFGTSANTEAAALWKAAGAEPIPYSDGELFGVLHWPPVAEEVVHRKYSSWFLSRLAGSPVSHLARLLWPLKIETENCGTLQQLTSAEQVNDLPIHACVTKLTAMRDLAYIRWRYFSGRDQTTSAFAFRSRQPDQEVLVTVNQRTRGFRDQIKTLNVLDVYPEVPAEEWLRIVGALLARFQKTVDAVVLRNQNQEMQDLFCRRGFQLRTFDAPTGWYLDKAHLLPHSDWYPVPADGDGLI
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