NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265349_1008734

Scaffold Ga0265349_1008734


Overview

Basic Information
Taxon OID3300028037 Open in IMG/M
Scaffold IDGa0265349_1008734 Open in IMG/M
Source Dataset NameSoil microbial communities from Maridalen valley, Oslo, Norway - NSE1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001973Metagenome / Metatranscriptome609Y
F083078Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0265349_10087341F001973N/AKSPALAEVERTQAAYEQAIDKLAADAKPQLENPATPLQASYREKLLVLDSAINDLRAQAGMNPSNSHLRQQLLAMYQEKQQTLEDILEEKR
Ga0265349_10087342F083078GGAGGMKLFLSNRNRERLRSSRLAGGIAAVLLLTAFPALASGTWPQDEVTRNFDKTLTLGAGQSVRVEHKFGEIKVHGESGREVKISAVIRAQASSHEEAESFAQKIQIEVQQTGEGISIRTIYPSEENKWFHISKHSSWSVNYDIAVPTDTPLNVRNSYGSVNIARVHGAVEVENGYGSLTVQDAGPARLTNSFGSIELTGAAGNT
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