NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256380_1011416

Scaffold Ga0256380_1011416


Overview

Basic Information
Taxon OID3300028039 Open in IMG/M
Scaffold IDGa0256380_1011416 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1424
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)2300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024653Metagenome205Y
F041144Metagenome160Y
F074146Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0256380_10114163F074146AGGAGMISRGYRVTEFRNKWKTIYSKTFLNKYIPIHEDVWVDDKEFIETMKKPEGEQYIWTVLEENGTWIVTSGYHLVNRIGFIITKNKWEHNMNIEVKGY
Ga0256380_10114164F024653AGGAMSRDIDTIPTVRRHIVSYKIYAEWSDSPKLIEIEHEMGNFLENTFNDWLRDIEDEEDLKC
Ga0256380_10114165F041144GAGGMLSDAITTVGFALQSHVNTCYHEDTEENRAERVELEVAWSIIKKHLKENEDD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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