NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209526_10000242

Scaffold Ga0209526_10000242


Overview

Basic Information
Taxon OID3300028047 Open in IMG/M
Scaffold IDGa0209526_10000242 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34299
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000262Metagenome / Metatranscriptome1428Y
F010863Metagenome / Metatranscriptome298Y
F028599Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0209526_1000024211F000262N/ALVSAIVLWLAAGSCKGSDYGVLQPTPEDLCKCLPIEPDIADFRHIAKHVAIPNMAAEEIGVDTILSWTQDAFVAPDAPRTGRELRVFHVATAFVQEASVNAADCDVHFEISQTADKKAPRVIVETPVDSEFCSARQTAQAQLAKHGFRLDSQHGGELPQALPAELLGMAFEDFDHSRGSAQVATIWELHPAIVTIP
Ga0209526_1000024213F028599GAGGMLSSTLIYFNKNQEEVARVTFDENEVPGWCIKSKAEPSFKRKFAAQREACAVWLREFDPETGKLRSKSQKREMANAY
Ga0209526_1000024221F010863GAGGMLETASTQRTEMFSVVGLTLDEVSSGALPHIRLSKTLDNRMTKSNFRYAERILVYTTIEADTQALVARTKYRQQGQFLVFLYFNDAAVEACREIGIPLRILDRIAESELPPRRATIIERPYLAPVSK
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