NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209526_10011111

Scaffold Ga0209526_10011111


Overview

Basic Information
Taxon OID3300028047 Open in IMG/M
Scaffold IDGa0209526_10011111 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6212
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000242Metagenome / Metatranscriptome1480Y
F000257Metagenome / Metatranscriptome1447Y
F004085Metagenome / Metatranscriptome454Y

Sequences

Protein IDFamilyRBSSequence
Ga0209526_100111114F004085GGGGGMGKILVSLAFATALLALASSEASAFLYSSFVCQAVGARSVGWGRSFFIGEAKVIALSRCARLSGICTISYCVPGY
Ga0209526_100111115F000257AGGAMTRRKREIVGLTNERDFPHLVELALPPGGFGRVFLEIDAFRRDRRIPVRRGRSRHEAEQFFIRFCFPDAATADAFRNRFGGECFTHAPGKPKPRTSATSSDAPPGGP
Ga0209526_100111116F000242AGGGGGVVRIAALSCRWFHSRMEDSMCWEIDYKFFAEQRKAQETRIKQEQRAGVINQLLNEANQQGEKTNVETTPVKEVVPAK
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