NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209526_10126589

Scaffold Ga0209526_10126589


Overview

Basic Information
Taxon OID3300028047 Open in IMG/M
Scaffold IDGa0209526_10126589 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1794
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002474Metagenome / Metatranscriptome556Y
F028133Metagenome / Metatranscriptome192Y
F037088Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209526_101265891F028133N/AMSELDKLDANEKAALESTLYRCRALVGRIGEELRNKKPEHFVDERSLADFHAALERAAWVLEQTIHTPTSTAKGLEGSRKRHR
Ga0209526_101265892F037088GAGMLMGLDDGILKRYGLPKPMVERALIQVYQTVVLGEQRYRDHS
Ga0209526_101265895F002474N/AVRACALHVASSPKVYLLPLYRLVYRHHNNQILVLIKPGASPIHARMRASLAKLDEGEFTEGHELDRKWRVSKEMIGRRLSQGEAKRWLAKFE
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