Scaffold Ga0209526_10177001

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209526_10177001

Scaffold Ga0209526_10177001

Overview

Basic Information
Taxon OID	3300028047 Open in IMG/M
Scaffold ID	Ga0209526_10177001 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1485
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F001448	Metagenome / Metatranscriptome	692	Y
F010717	Metagenome / Metatranscriptome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209526_101770011	F001448	GGCGG	MKKKKERRIYRPRLVGGKVMLPADLHRLHQYMLEVERIDLSDEMRAVVESEWPELAYKLPPKSSI
Ga0209526_101770012	F000037	GGGGG	VTSLVLKGATASPPSGEWDDDDYDVLEDSAVVGRIMKTAAAHVGTPWMWTLAFGHHVDRSPTHGYAATREDAMAAFAKSWRRE
Ga0209526_101770013	F010717	AGG	MVARRRRKRSLPPPRHRALELLASRRDGCTEAIMIAHGFTVPQMVELVRTGLATAHTRRAIAGRRTIEIAYMKITEAGRQALAGGAKP

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