NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268328_1000247

Scaffold Ga0268328_1000247


Overview

Basic Information
Taxon OID3300028050 Open in IMG/M
Scaffold IDGa0268328_1000247 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2829
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046767Metagenome / Metatranscriptome150Y
F070784Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0268328_10002472F046767N/AMVPNAPKWKETHQKMSLDSNGLDRERLLRKFLTTHRGTNICINCTSLAHFASSLCSSIMVPNAPKRKETHENMSLGSNCVDRERRFREILTRLCGTNSCINCTRLAHLHRVSCSSEMVPNAPKRKETHQKMSLGSNGVDRERLLRKILIRHCCTNFCINVSLARFAPSFVQ
Ga0268328_10002473F070784GAGLLEIFATNAPDPHHCNLNSCFGAFLSVWVHLEPFRYCTKLAAKHAKLVQLMQKFRPRCLIIIFCNERSQSTLLDPKLMFWCISFRSGAFWTVSLLHETWCKSSKLVQLMQKFMPRCRARTFRNECSRSTPLDPKLMFCFVSFRLGAFGTVSLLHKTCCKTCQTGTINAKVRATMSC
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