NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268344_1000408

Scaffold Ga0268344_1000408


Overview

Basic Information
Taxon OID3300028051 Open in IMG/M
Scaffold IDGa0268344_1000408 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1859
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000661Metagenome / Metatranscriptome950Y
F069583Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0268344_10004082F000661AGTAGGLVGSQNLMENRQNWCECSCHEVALELFATNAPDPPHWTLNSCFGAFHTIWVHLGPFGCIKKLEAKRAKLVQKFVSRSHFGIFRNECTRSTPLDPKLMFWRVSYYFDAFGTVWLARKTRWKTGRTNAKVRATKSRQNFSQRTHPIHPIGP
Ga0268344_10004083F069583N/AASNAPNPPSWTLNSCFRVFCSIWVHLGLFGCLTRCKTGRTGAQVRATKLSQNFSKQTQPIRPHWTLNSCFCAFHTIWVHLGLFGCVTTLSLKRVKLVQKFGTRSRVRIFRNEHTRSSPLDPKLIFLCISYYFSAVGTVWLARKT
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