NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268300_1003417

Scaffold Ga0268300_1003417


Overview

Basic Information
Taxon OID3300028052 Open in IMG/M
Scaffold IDGa0268300_1003417 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_15MAY2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)964
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011828Metagenome / Metatranscriptome286Y
F102331Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0268300_10034171F102331N/AMQKFGPRSRVGIFRDERNRSTPLDSKLMFWCVLYYLDAFGPFGCLTKLNAKRAELVQKFVPRSRVLSFRIKHTRLSPLGPKLIFWCVSYYLGTFGTVWLPYKTRCKTGRSGAKVRAMKSCQNFSQRTYPSTPLNPKLMFHSVLYYFCAIGTVRLRYKTQCKTG
Ga0268300_10034172F011828N/AFYTIFVQLAPFGCVTKLSAKRANLMKKFVPRSRVGIFRNERNRSTPLDSKLMFLCVLYYLDAFGTVWLPYKTRCKTGRSGAKVRAMKSCQNFSQRTYPSTLLNPKLMFDIVSYYFCAFGTVLLHYKTQCKTGQIDAKVRATKSRWNFSR
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