NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268332_1005612

Scaffold Ga0268332_1005612


Overview

Basic Information
Taxon OID3300028058 Open in IMG/M
Scaffold IDGa0268332_1005612 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1160
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002513Metagenome / Metatranscriptome552Y
F004597Metagenome / Metatranscriptome431Y
F009118Metagenome / Metatranscriptome322Y

Sequences

Protein IDFamilyRBSSequence
Ga0268332_10056121F004597GGAGGMHLMHPILIFTMGQVRQRNGVKPPETRVLDVKYVVRNQTDVLEHRNGVQIPKM
Ga0268332_10056122F009118N/AMHPNANFRNGLGAATKWRETIQNMSFRLKEMEWACLVQKNKKRF
Ga0268332_10056123F002513AGGMVLEVLWIKILFIKLTNSSKHSLMLAKIGIEVHLMNEFLPLEPFLVF

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