Scaffold Ga0268332_1021495

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0268332_1021495

Scaffold Ga0268332_1021495

Overview

Basic Information
Taxon OID	3300028058 Open in IMG/M
Scaffold ID	Ga0268332_1021495 Open in IMG/M
Source Dataset Name	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	792
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000255	Metagenome / Metatranscriptome	1449	Y
F080746	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268332_10214951	F080746	N/A	APNPLYWTLNSCFGALHSVWVHLVSFHKRMKLDAKQGELVQLMRKLVPRSHAGIFLNEST
Ga0268332_10214952	F000255	AGG	MGSKLCVRREKSRRDFVARAFALIALVHPVLHQVSLGYEMIPNAPKHYATHQNMSLGSNGVDWVRSLQKIPT
Ga0268332_10214953	F000255	AGG	MGRIGCVRCEKSRRDFVARTFALIAPVHSILNRVSCSYETIPNATKQCATHQNMSLGSNGVETVRS

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