Scaffold Ga0255355_1001353

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255355_1001353

Scaffold Ga0255355_1001353

Overview

Basic Information
Taxon OID	3300028068 Open in IMG/M
Scaffold ID	Ga0255355_1001353 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11526
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (93.75%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3529	Long. (^o)	19.0475	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009261	Metagenome	320	Y
F012316	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255355_100135311	F009261	GGAGG	MILTPSNTGNLVAGAGVGIFAWGALLKADHIPWVQKLLTTKRKNATLNWVNKNKSITLLGLETVNFGIHGITNPNAVIFALGNTALNIVMLWAFLPFRMARAEKLRVKNLLKGAA
Ga0255355_10013539	F012316	AGGAG	MSKSTVETPGCWADRLMSKARSWGRNGVSSVNLWRKRQDQDALERSLARIIETANGHRAKGLPKGSPAYVVLRAKADATIQIFASKWGVDIAIIRAQAPALADLDSLCVQHRQLPAGIKLLVGLLGLIVSLVLLGVASGLVHAGHDWVMHFVAR

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