NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255355_1005087

Scaffold Ga0255355_1005087


Overview

Basic Information
Taxon OID3300028068 Open in IMG/M
Scaffold IDGa0255355_1005087 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4098
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012741Metagenome277Y
F069592Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0255355_10050871F069592AGGMSDNHTGHTVLSPLFAQNFVQRLEQLNNVDQFTDSSNLALPFALFQLCQINLSVTTSIEAVALLGGRSLPRCGRAASSATHPSGKVTPQRPHSD
Ga0255355_10050872F012741AGGAGGMLTPQSRNLLGVLSLTNSAGGIFQSLKRQTAAAGFIAYCGIISAVLGLWIWLWRDTTFEDKTLTRTVGAALVLSSFFFFQHLRRGFGTFFLILTSTGIGIAVHYSNHPLIHGDRPEIPAIVLIAIGLIAYFAQTRYVAGFFFFLASSIAIIAILWFNSALFCPMVMVIAGGILIFLGMMIRSLAMFNSFM
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