NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255353_1019103

Scaffold Ga0255353_1019103


Overview

Basic Information
Taxon OID3300028070 Open in IMG/M
Scaffold IDGa0255353_1019103 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1823
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009261Metagenome320Y
F085038Metagenome111N
F100248Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0255353_10191032F085038GGAGGMKLIFGFLLFVIAVAITGGLYLFIRKEDGKQSDLQHLRSLPRRIAERFQSFGEYLTKLFGTKSGPKTVTA
Ga0255353_10191033F100248GGAMTKLSLIAILALIFFGVTRFAQFILALFVIVFFGVTTYELLRALIQPAKQQYAA
Ga0255353_10191034F009261AGGAGMILTPTSTGSLAAGAGLGIFSWGAFLKADKIPLVKKLLTTKRKDSSLIWISKNKGITLLGLETINFSIHGILDPDSVMFALGNTILNIFMLWVFLPFKMAGITKKQTASVLKGTA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.