NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255352_1029797

Scaffold Ga0255352_1029797


Overview

Basic Information
Taxon OID3300028082 Open in IMG/M
Scaffold IDGa0255352_1029797 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012741Metagenome277Y
F069592Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0255352_10297971F012741N/AEKRTAMKEESMLTPQSRNLLGVLSLTNSAGGIFQSLKRQTAAAGFIAYCGIISAVLGLWMWLWRDTTFEDKTVTRTVGAALVLSSFFFFQHLRRGFGTFFLILTSTGIGIAVHYSNHPLIHGDRPEIPAIVLIAIGLIAYFAQTRYVAGFFFFLASSIAIIAILWFNSALFCPMVMVIAGGILIFLGMMIRSLAMFNSFM
Ga0255352_10297972F069592AGGMSDNHTGHTVLSPLFAQNFVQRLEQLNNVDQFTDSSNLALPFALFQLCQINLSVTTSIEAVALLGGRSLPRCGRAASSATHPGGKETPQ
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