NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255356_1026058

Scaffold Ga0255356_1026058


Overview

Basic Information
Taxon OID3300028084 Open in IMG/M
Scaffold IDGa0255356_1026058 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1360
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F026465Metagenome197N
F075559Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0255356_10260581F075559GAGMETIIREVNPARLAWGTFDHAKSDYMNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWLTIALSNDGARAYRLC
Ga0255356_10260582F003764GAGMQIQLDSPYAHDENPAALLAGAEIEAAGLHRFLKIVRLWSQSSSLSRPRREEIIEEEQRLASLYAAILFEIGSAFGLRAANELKVRIETSCILDDWECPPAEQGLLFPNPNDPTTEASPATARK
Ga0255356_10260584F026465N/AKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
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