NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255356_1027113

Scaffold Ga0255356_1027113


Overview

Basic Information
Taxon OID3300028084 Open in IMG/M
Scaffold IDGa0255356_1027113 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1308
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003942Metagenome460N

Sequences

Protein IDFamilyRBSSequence
Ga0255356_10271132F003389GGAMQITVWSVAADDNNGSYASVHETESAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDGLDEWIHEEVIEPLNTYSVDQHKIDLPTTLSSADDGKHITRRELASVLHGLRLMQEQWEPRMHGCTSVGLHDPLELSEPNSCDHFCDEEDSPLSPGEIDELCERLNMEFCN
Ga0255356_10271133F003942GGAGMLGHRLNPTIHRYEDVELIEIHSEYLECSFMVARDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEMQRQAGHAIYADHLSAMLYGTGLNPARS
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