NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255201_1000835

Scaffold Ga0255201_1000835


Overview

Basic Information
Taxon OID3300028086 Open in IMG/M
Scaffold IDGa0255201_1000835 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5422
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012017Metagenome / Metatranscriptome284N

Sequences

Protein IDFamilyRBSSequence
Ga0255201_10008351F012017N/ADWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAQRNGEDVTASALMRLISHDRDIVTAVYSSRSLNTHWHVHPIKGEEPDETGLQRVERASIGFSKIKVPVFKKIALANVDRVAMLVDPNKAPKLVPELFPMELKGRNTPEHRMKQIWAALSEVKNDEALRARIERELTIRYDEPNAFISEDFGFCDLARAAGYDIWMDTLMVLGHQASVVVPVETAKLLEMLSEPWRKEELAVIKQQMLEAQAAKKK
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