NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255354_1067865

Scaffold Ga0255354_1067865


Overview

Basic Information
Taxon OID3300028087 Open in IMG/M
Scaffold IDGa0255354_1067865 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)702
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
Ga0255354_10678651F003764GAGMQIQLDSPYVQDENPAALLAGAEIEAAGLHRCLKIVRLWGQSSTLPRLRHDEMIEEEQRLANLYAAILFEIGSAFGLRAADELKVRIEAACILDDWECPPAEQGLLFPI
Ga0255354_10678652F004301N/AEPSVNARNAKRQFDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIAELEPKVAALSQIIGHAI
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