NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255172_1010348

Scaffold Ga0255172_1010348


Overview

Basic Information
Taxon OID3300028103 Open in IMG/M
Scaffold IDGa0255172_1010348 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1837
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000763Metagenome / Metatranscriptome901Y
F004977Metagenome / Metatranscriptome416Y

Sequences

Protein IDFamilyRBSSequence
Ga0255172_10103481F004977N/AAITVLNIGAGTCTISAVTPGTTTVLSAGAVAAAPTLAQYKSAVCIKTATDTWYVVGAIA
Ga0255172_10103485F000763AGGCGGMNMKNPAILTAGAFLAAWGASNFALDYRSILWAVLAGVFGYA

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