NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256335_1006930

Scaffold Ga0256335_1006930


Overview

Basic Information
Taxon OID3300028112 Open in IMG/M
Scaffold IDGa0256335_1006930 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2703
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F012670Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0256335_10069307F012670GAGGMFDQPIRPEGSHVSSEDKKAQARAYAAQKRAAKKAEKHAMGLATGRTAPTGVVNKGGRPKSIVNRVTEYGALFNKLNEAHVEKGLPPLKTAMEVLIEAMQSDELDLKEKAKIAEKLATFESSRAPVISIEHVQNLVKEEDVTADDALDEFLDSLRKV
Ga0256335_10069308F001915N/AVEDIVNLADGWFGHEADGILTRNREVFRHRVTVATTEQLFNKGREFIAVCRGTKITDHGWFHVEDPDDLKAFCWFDRGGYTTYSNEEISNAKFHHVDLSLSVRQRVKLINEMIDQHILWAHTWGIPVVCSTSIRSDHDGFMKIHKKRGFTVNGSYAWIRTEEAAKCLINQ
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