NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256368_1013363

Scaffold Ga0256368_1013363


Overview

Basic Information
Taxon OID3300028125 Open in IMG/M
Scaffold IDGa0256368_1013363 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1408
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065638Metagenome / Metatranscriptome127N
F090618Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0256368_10133633F090618GGAMDNKDYKETLAKQEDLNWDGNTEPEQVEVEYTYIVDKDSMEKLRKLIHDKS
Ga0256368_10133634F065638AGGAVPDFKTKFYKAIEEAVVSPEEASQEFGEEDFRWAETRMGEDSPTGLSQIYINDSKFQKFNAGPNYRKEMLIGEGLHLLKEIDPERAERLYQSAVNDPATLGWLKESFKREAERGEQRGFEQWVRHSRLDQIVGGYLLGGKNSSVPTMRDWPTERLPYGKTFKAEIEKLKTDLDL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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