NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256368_1026188

Scaffold Ga0256368_1026188


Overview

Basic Information
Taxon OID3300028125 Open in IMG/M
Scaffold IDGa0256368_1026188 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1037
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038862Metagenome165N
F085795Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0256368_10261881F038862GGAGMSDKAWHISYLSAIVGPCAATTDDGCMAWEDEEKSDFVMRLLDRDNDGKNLLVVIQPEMNELALYTVTGYCVANDLPYMIKDWDALSAEGQK
Ga0256368_10261883F085795N/AASLDLGKARTVADITGLNQSNIVLPILYLMRCAGLEGRLKDEATVSRIADTYMGDILHHFDKNTRWVKNNRCFNSVQFKAAMAYCVYTRVLPDYEAISVLDMLQNDKDFLWPSMYRNYREQIMFPNGKLNTGGKTVANDKFCRGVYLLERRAKDQSKIQISSGFLTDLSSNVRRVIRMAAEE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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