NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228645_1001869

Scaffold Ga0228645_1001869


Overview

Basic Information
Taxon OID3300028128 Open in IMG/M
Scaffold IDGa0228645_1001869 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 57D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4177
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054776Metagenome / Metatranscriptome139N
F100947Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0228645_10018691F054776N/AMAQKTENLDKEIVERLKVLRDETDKIVIFLGQMAVQKRALNKKLNEISDNEEKYGAMNDKYIYELEEKLGEVDKKYKNGQIDLDKG
Ga0228645_10018693F100947N/AMDKLYFIFETSQSLSDTGIGSTTEQEVSESNDVYRVRVDWVTKKSVPDNCRYEIVSESQFPPDFDNYNWDYSNYDGIGELNSFTQSLNEYVTQSLSLXVGH

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