NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228619_1048965

Scaffold Ga0228619_1048965


Overview

Basic Information
Taxon OID3300028130 Open in IMG/M
Scaffold IDGa0228619_1048965 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 22D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1163
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017728Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0228619_10489653F017728N/AMEPVDDISIGDIIEMTRTGKEFLVESITPSGIILKECTTYVSFSRSALNERLKRNSAIHKAI
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