NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228608_1001888

Scaffold Ga0228608_1001888


Overview

Basic Information
Taxon OID3300028136 Open in IMG/M
Scaffold IDGa0228608_1001888 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6351
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067459Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0228608_10018881F067459AGGAGMSVPFIWVDGNLTVVLKSKSYQVLPDHTNYKMIVEALPTATEDELLELVDIEKAVATFSDGQVTI
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