NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268334_1000192

Scaffold Ga0268334_1000192


Overview

Basic Information
Taxon OID3300028140 Open in IMG/M
Scaffold IDGa0268334_1000192 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_07AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2254
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000661Metagenome / Metatranscriptome950Y
F002578Metagenome / Metatranscriptome546Y
F017779Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0268334_10001921F017779GGAMKAPDPPHWTLNSCFGVFRTIWVHLGPLCCHMKLGAKRAELVQKFVPRTRVRIFRNEPTRSTPLDPKLMFWCISYHLVTFATIRLPYKT
Ga0268334_10001923F002578GGAGMNTPDPPHWTLNYRFAAIHTILVHLGLFGCLTKLGAKQAELVQKFVPQSCIGCFRNERTRSTPLDPKLMFW
Ga0268334_10001924F000661N/APDPPHWTLNTCFGAFLTICVHLGLLGCLTKLGAKRVELVQKFVPRSCIGIFRNERTRYTPLDPNLMFWCVSYHLGAFGIVWLPYETRCKTGQTSAKVRATKLRWSFSR
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