NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247682_1099782

Scaffold Ga0247682_1099782


Overview

Basic Information
Taxon OID3300028146 Open in IMG/M
Scaffold IDGa0247682_1099782 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004852Metagenome / Metatranscriptome421Y
F008336Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0247682_10997821F008336N/ASILKRLQAISDHVNVTPANLRPIGNPSRLPQPATANGGAIGHAPSHSNGHALNHTHAHGHPQGYPLRRPSAPVFQRPLAR
Ga0247682_10997822F004852N/AIPQEITPGTITAEAVGSAASGGKTYEGLRVTTSDIEVLLLLDTNHRLMRLEVPASKVAVVRE

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