NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268354_1009178

Scaffold Ga0268354_1009178


Overview

Basic Information
Taxon OID3300028148 Open in IMG/M
Scaffold IDGa0268354_1009178 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_18SEP2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)798
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007677Metagenome / Metatranscriptome346Y
F044264Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0268354_10091781F044264N/AFGTAWLPYETRCKTGRTCAKVRATKSHRTFRNERTRSATLDPIITFWCIRTIWVHSGLFGCLTKLGAKQAELVQKFVPRSYVGIFRNECTRSTPLDTKLTFWSVSYYLGAFGTVWLPYETRCKTGRTSAKVRATKWRRNFSQ
Ga0268354_10091782F007677N/AVSLGSNGVDRVLLLRKIPMRLRGTNFRTCSARFASSFVRQPNSPECTQIVRMHQNVSIGSHGVDRVPSLRKNPTRLCGTIFCSSSARFAPSFVRQSNGPECNLIVGTAPKRQFRVQWGGSGAFIAKNSDATSWHELLH
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