NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268320_1004950

Scaffold Ga0268320_1004950


Overview

Basic Information
Taxon OID3300028153 Open in IMG/M
Scaffold IDGa0268320_1004950 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)844
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000698Metagenome / Metatranscriptome930Y
F014696Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0268320_10049501F014696N/APVFQRVSEGNQTVPNVPKWYEMHQNVSLGSNGVDRVRSLQKILTQLRGLNICTSSARFAPSFVRQPDSPEYTQMV
Ga0268320_10049502F000698N/AKRAELVQKFVPRNRVGIFPNERTRSTPLDPKLTFWCIFHTIWVHSGPFGCLTKLGGKRTELVQNFVPRSRVGIFRNERTRSTPFKPKLMFWCLSYHLGVFGTISLPYKARWKTGRTSGKVLATKSRRNFSQRTHPIHSIGP
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