NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268278_1110922

Scaffold Ga0268278_1110922


Overview

Basic Information
Taxon OID3300028162 Open in IMG/M
Scaffold IDGa0268278_1110922 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_55m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)638
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075035Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0268278_11109221F075035N/AAKTVQGQDTTALWNAKMLQGRDTTALWNAKTLQGKDTTGFVRTGQTDAVTSAMIVPNTVVRADVATDFKAPYADTADYAAAAPATDSARVAGNSHLLQGKDTTALWDAKTLQGKDTTALWNAKTLQGKDTTALWDAKTLQGKDTIGFVRTGQADAVSSAMVVNGTIARADVASDFKAPYSDTADYAISAPASDSARVAGNSHLLQGKDTTAL
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Institute for Fundamental Biomedical Research
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