Scaffold Ga0268284

Basic Information
Taxon OID	3300028176 Open in IMG/M
Scaffold ID	Ga0268284_1004544 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_40m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028176 Open in IMG/M

Scaffold ID

Ga0268284_1004544 Open in IMG/M

Source Dataset Name

Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_40m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5214
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

5214

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium 45-6	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium 45-6

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Sakinaw lake, British Columbia
Coordinates	Lat. (^o)	49.68	Long. (^o)	-124.009	Alt. (m)	Depth (m)	40
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Canada: Sakinaw lake, British Columbia

Coordinates

Lat. (^o)

49.68

Long. (^o)

-124.009

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F041560	Metagenome	159	Y
F089755	Metagenome	108	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0268284_10045441	F089755	N/A	MIDITETPNLVSFAGNPVLFEACSSEYLVSLGTRAECELVVSGIDTNVGHSFTLKFAGKTLVFKSAGITEFNGLLFEVAYYGWTYIDFAFSIYQCFLENYDIQKAFDVTIGPVGTSERKITLKAKEAGSDYSVTLTNVGVYGVAQGTNTPGTDDVYRDFFGILCLIRDSYGNAIGEDIKPTDLMGGAKFDISDYLRSKFCAWEITRFEFPELTGNVRMHGWDYLLKYRVSFAESIAGHVRGLQSTGWKYALAGGLNHELLTCLNENYQEYFSIEANKSKFLTWLPTTKYSRSGVVEKLFFLFQNNPDLVQYRLVVVVTFTDYTHKIINATPLATYTPYTIAEFKVGFDHLNLVNAWYGKTVKTWEVMLMDSDDEYLSERRIYINDSRVFENEKVF
Ga0268284_10045442	F041560	N/A	MLSILIADQPLDLSDDFSVSLNLKSPLFNDVGDYSYPFKVPVTARNKAILGWKNRIAASQSIYETYEGSFRWNGIVLFKGQVRIKTAGEKTFEGILYINKGNFNYEVKDLMMNRVDLGLKEFASDQDAINYFNWSLTHFYPEVDFSMPKIGNLDYYDPPATNPELMAYNYVFPDGLLHKTTSDGTQRTILVPFLYLKYVLNKLAEIFGYRLEDEFFTSSTELSRLVIYHSVNLSKVIFGLQQLFYCRFVPKVKVSEFISGLEKWFNCSFHADSKQRVIRIVGNRNVLLHSELVELSENIISISQEIPDEITGYRFMIGPDAGDKVYQAQLDAEKGITDYIRGAVGSFSEIPPYPFTWIGDIYYVVDTNTWWQLGVNGITFLIEWIQMPNGPVLTDKFFYKYGDEKNKFETSFSSLYDRFGIVSCGNLGTDKDKITPRLFWVGTTGGYGYPVELRGLADGVNLSLRYTGSHGIFNLFWKDWVDWIMNTRKSVKIEKQMDFIELKNIDFTKRYRMNGINYLVSEISVTLNKSSIKSAQLKCFSCP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0268284_1004544

Overview

Ecosystem & Geography

Associated Families

Sequences