NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265593_1134705

Scaffold Ga0265593_1134705


Overview

Basic Information
Taxon OID3300028178 Open in IMG/M
Scaffold IDGa0265593_1134705 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007470Metagenome / Metatranscriptome350Y
F039125Metagenome / Metatranscriptome164Y
F045058Metagenome / Metatranscriptome153Y
F047650Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0265593_11347051F045058N/ALTFNVGTGSIEKVSRIRDKYNLTESYVSEYETTGY
Ga0265593_11347052F007470AGGAGMDYQDGFQDGVKFAREVIINNLRLWAETSDDGGVMDEIGDRIEFGVINYEL
Ga0265593_11347053F047650GGAGMNSEDINPIYYCDSCSVARASHLIKLLDGELAFCGHHYFKNKEALDKQSYETIQLDKAEEAIPQLTKAE
Ga0265593_11347054F039125GGAGMGDRANFGFRDSRENVVFLYGHWAGHNMLAKLANAVQAAESRWQDDSYATRICI
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