NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257107_1000445

Scaffold Ga0257107_1000445


Overview

Basic Information
Taxon OID3300028192 Open in IMG/M
Scaffold IDGa0257107_1000445 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15675
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006643Metagenome / Metatranscriptome368Y
F007946Metagenome / Metatranscriptome342Y
F008525Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0257107_100044516F007946GAGMSTKDLIDNIKKGDAQKSNNMFNSIMHDKIIDALDNHKQEVASKLYGASNDTPVAEEPAVETPEGETTTDENV
Ga0257107_100044517F008525AGGAGMKTFKESFNEVIEAKLKLPKGEKVAKELTKLGRKKKTSAVITNKFNLYIDGVRVDKYKSVKSAEEALKDFINLMGA
Ga0257107_10004453F006643AGGAGMANSELLDIEKRLERMHNALKRQEKELESWRHRSTRIPNWVRNSGVALFMAIFAQTMAAVWWASSITNTQANIIADVKINTEYRITSTERYNEIMIELTKLQVMMETHFNLKD
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