Scaffold Ga0257107_1006653

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257107_1006653

Scaffold Ga0257107_1006653

Overview

Basic Information
Taxon OID	3300028192 Open in IMG/M
Scaffold ID	Ga0257107_1006653 Open in IMG/M
Source Dataset Name	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3882
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: Northeast Subartic Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001620	Metagenome / Metatranscriptome	662	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10066532	F001620	GGAGG	MDAATLVTIITMFVVTNTSSEFIKYDGLMDCLKDKRAIEKKKDGRRVICGPSMAELDLDGNIISIHNKMPDQSGSLKLGGTAKSLTEKKKKKNTTVLTQD

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