NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257107_1008425

Scaffold Ga0257107_1008425


Overview

Basic Information
Taxon OID3300028192 Open in IMG/M
Scaffold IDGa0257107_1008425 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3418
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001493Metagenome683Y
F004439Metagenome438Y
F035798Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0257107_10084252F004439AGGAMKSFKQHLNEARGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGDGIKSIAKLQGQKKQISAFFEMQSRYMEIGVVTQGGVHSVLEMDADVLLSASGDVMSHLDQQGRRWTSISDLKETSRWTKFAAVEKDLEKMFDPLVKKYLKKGEFQENATVWELWRMAERKVDKKTMSLIIKDYMDGMEKVIKKNIDTFSSAMLSYAKKRSTNLSWDEQIVNNIKVKTAHFFKLKLLRGKNSLSPEQEELIEFAKSKGWSIKMWDAAIELEAYTRQVAAKELGK
Ga0257107_10084253F001493AGGVKSFKQHLKERFQEWQSGSAPAWTESLSTMLFDLSRAGLKDLKIPLSPSIMSRVWPKSVRSKAFHLTDDDGIRKLKGMQKGKKSISAFYNIDDYIIGSGIKTHGGYVVELEGDVLAASPDDVSSQPDKSGRRWITFSSLMNPSTDADPGLNGKAQLRGIETDLQNVLEEILRKNGEDVETGSQANIIGLQWSGLGKKTGGKEKSLIIKDYIDGMEKIMKKHSKSLRSVLTDYTKKKTLEPDPDSGDVAMWDELVVNNFTIEKILVGPEFVSDFLEDDDIEGFPFELFDDAGDMVDYINRTLR
Ga0257107_10084255F035798AGGMKKFKQANADLYEISKEEKLAHDTALVTEAGDDMCSIPLEKLRSKVMRDRHKKMCVIPKNVNTKSMWSKAAQKAAGGRHKLYNSLEEGPADNLVVLIRDITSQMIGAIKKNDQKKLVGLYKNLGKVIK
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Institute for Fundamental Biomedical Research
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