NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257107_1104358

Scaffold Ga0257107_1104358


Overview

Basic Information
Taxon OID3300028192 Open in IMG/M
Scaffold IDGa0257107_1104358 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)845
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012921Metagenome / Metatranscriptome276Y
F050681Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0257107_11043581F050681GAGGMKKFKEYLGEAFYKVKIPDVAPTFVEAGSEAAVKMNMRKIMKPDAIKELEIERVTPATMKQMYRDMAAGKEKEKE
Ga0257107_11043582F012921AGGMADDFDFGFSAVSTDEFKKTQTDTEAQPSTASSEEFDELKKKIDSISSLIQTLGDREDTSLFDETGEQISRLEGKVDKILAMESSQAVTALTEQGSSIRAVIDEVEERKGELNEKFMGKLKELETLVIPMLKGLMKNADKEYIYWPGRTPILEKQIEKVYSITRPE
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