NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257106_1126020

Scaffold Ga0257106_1126020


Overview

Basic Information
Taxon OID3300028194 Open in IMG/M
Scaffold IDGa0257106_1126020 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)911
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031250Metagenome183Y
F049031Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0257106_11260201F031250AGGAGMEGIYNKENLFAEFAMQKTNADKVKFLQEMKELKKTQPHMFRGTSVTQKNFDNLIEEWSKPQPWVEVNRAIKERNRIINS
Ga0257106_11260202F049031AGGAGMFHVVYSRDYWDTEDQGTFTNTWTIYRNVSYFKLREMQKAIPSLLKNADKTYAEYESKQEHKSDPTQFHKSEVYVVDSSDYFKTYKDMYPDSYMGPSGLIPEKEDYFYSYGQKCQFMLLKDFDESYTWFGKDFTQEQINQAYEDRDNKYIKEIVDSYTAXQNHKNIV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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